July 29, 2021 -- TCGA.SampleSelection: Retrieve #TCGA data from Broadinstitute FireBrowse & perform sample selection based on the expression level of a gene of interest using GSEA_MSigDB tools.
Now updated for better handling of invalid and unmappable gene names.
It has also been updated to R 4.0.4 and once again accepts Clariom arrays.
July 14, 2021 -- We are looking into the issues rendering the files that GSEA & GSEAPreranked create from within the index.html. We, therefore, recommend that you download the .zip file created by GSEA & GSEAPreranked and look at the results locally until this issue is resolved.
Jun 30, 2021 -- Pathway enrichment is useful and ubiquitous in omics analysis. But can we similarly quantify changes in cell functions, by analyzing omics in systems biology model outputs? Check out CellFie by Anne Richelle and our friends in the Lewis Lab - now in Cell Reports Methods
